Hello,
Recently I wanted to integrate an XBee Explorer regulated into a circuit made with a perfboard.
However because of the pin alignment it is a bit difficult.
Just to show the difference, here is how it goes with an Arduino Pro Mini from Sparkfun and the variant from Watterott : the pins from the Wattuino fit the alignment from the perfboard pins while the the pins from the Arduino Pro Mini don’t.
http://arduino.cc/en/uploads/Main/ArduinoProMini.jpg
http://static3.watterott.com/wattuino_pro_mini.jpg
So I’d suggest to systematically align the pins to perfboard rows in future boards. Perfboard compatibility is quite useful when you are a beginner.
Just my two cents…