As Mattylad mentioned, SMD parts have very many advantages over through type components. I’d add one more advantage, when you get to high frequencies like you are, using through type components creates tiny pointy stubs on the opposite side of the board, therefore acting as an antenna to emmit or pick up unwanted RF waves.
You should use vias to connect the two ground planes on either sides. You should also add random vias all over the board to improve thermal properties of your board.
A tip is to avoid having any high speed traces crossing each other on either side of the board. Having more than two planes usually helps by having the plain directly underneath as ground.
Impedance matching is very important to avoid losses in the transmission line.
Think of microstrips as any trace that transmit microwave frequencies. Your board has only 100MHz tops so you are not within the Microwave range.
Make power traces as thick as possible. Preferably 12 to 32 mils wide if you can. Also, avoid having any RF traces passing across the power trace.
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For high-speed boards, plan the stack-up properly, understand your board size, if it’s smaller then plan the signal layers and a corresponding number of planes for it. Trace widths, the material used, spacing will help you in having controlled impedance and check for manufacturing feasibility with the vendor.
Plan your VIA’s that goes to your board, like through holes or blind via’s any u need. Note that cost is important so through hole via are cheaper but carefully plan for the stub. What is the frequency of the board. say if it is 1GHz the stub length will affect the performance of the board.
Component placement is major part. Understand the thermal flow, air flow of the board for components. Try placing your components so that trace length is maintained minimum and plan for EMI issues at the initial stage itself.