We can’t tell you where to place the parts. You need to buy some perfboard and start some trial layouts to minimize the crossovers and interference with other parts. As for resistors and the like, get them through hole and just bend the leads to fit into perfboard holes. One the backside you use wirewrap or other fine wire to make the connections. I find that a wirewrap tool works wll not just on the special wirewrap posts, but also on many through hole components. If not, I strip a bit of the wire wrap, form a loop with tweezers, place it over the lead and solder it in place. I did a 144 pin part once this way.